Trans-eQTLs across different cancer types
In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
Gene symbol
|
Gene position (hg19)
|
p-valule
|
|||
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs1390061 | chr8:15276092 | C/T | TMEM66 | chr8:29920528-29939940:- | -0.6 | -6.4 | 4.63E-10 | Box Plot |
| BLCA | rs1390061 | chr8:15276092 | C/T | TNKS | chr8:9413424-9639856:+ | -0.59 | -6.97 | 1.35E-11 | Box Plot |
| BLCA | rs1390061 | chr8:15276092 | C/T | TRIM35 | chr8:27142404-27168836:- | -0.62 | -6.12 | 2.29E-9 | Box Plot |
| BLCA | rs1390061 | chr8:15276092 | C/T | VPS37A | chr8:17104080-17159936:+ | -0.71 | -7.11 | 5.67E-12 | Box Plot |
| BLCA | rs1390061 | chr8:15276092 | C/T | WRN | chr8:30891317-31031285:+ | -0.54 | -6 | 4.45E-9 | Box Plot |
| BLCA | rs1390061 | chr8:15276092 | C/T | XPO7 | chr8:21777182-21864096:+ | -0.82 | -8.15 | 5.12E-15 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | AGPAT5 | chr8:6565878-6617187:+ | 0.74 | 6.23 | 1.26E-9 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | CCDC25 | chr8:27590828-27630170:- | 0.9 | 7.28 | 1.96E-12 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | CDCA2 | chr8:25316513-25365436:+ | 0.55 | 6.43 | 3.77E-10 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | CHMP7 | chr8:23101150-23119513:+ | 0.97 | 8.54 | 3.3E-16 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | CLN8 | chr8:1703944-1749877:+ | 0.77 | 5.97 | 5.48E-9 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | CNOT7 | chr8:17082473-17104387:- | 0.91 | 7.6 | 2.23E-13 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | DCTN6 | chr8:30013813-30041156:+ | 0.78 | 6.35 | 6.27E-10 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | ELP3 | chr8:27947190-28048673:+ | 0.85 | 6.73 | 6.07E-11 | Box Plot |
| BLCA | rs1390062 | chr8:15276184 | C/T | ENTPD4 | chr8:23243296-23315208:- | 0.63 | 6.04 | 3.6E-9 | Box Plot |